Task 10713

Name mdsim2_29944_1550380718.117481_1
Workunit 3964
Created 17 Feb 2019, 5:18:39 UTC
Sent 17 Feb 2019, 5:21:19 UTC
Report deadline 24 Feb 2019, 5:21:19 UTC
Received 18 Feb 2019, 19:39:33 UTC
Server state Over
Outcome Computation error
Client state Aborted by user
Exit status 203 (0x000000CB) EXIT_ABORTED_VIA_GUI
Computer ID 59
Run time 1 hours 17 min 41 sec
CPU time 1 hours 20 min 15 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 116.16 GFLOPS
Application version MD sim v1.00 (vbox64_mt)
windows_x86_64
Peak working set size 86.06 MB
Peak swap size 96.77 MB
Peak disk usage 207.33 MB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<message>
aborted by user</message>
<stderr_txt>
XPWRBN:00/input/input0 (1313)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1314)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1315)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1316)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1317)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1318)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1319)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1320)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1321)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1322)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1323)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1324)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1325)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1326)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1327)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1328)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1329)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1330)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1331)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1332)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1333)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00/power_supply/BAT0 (1334)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1335)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1336)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1337)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1338)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1339)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1340)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1341)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1342)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1343)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1344)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1345)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1346)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1347)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1348)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1349)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1350)

2019-02-18 13:43:45 (17516): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1351)

2019-02-18 13:43:45 (17516): Guest Log: Mon Feb 18 13:37:33 UTC 2019 dhcp -------------------------------

2019-02-18 13:43:45 (17516): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.000169 main     Log opened 2019-02-18T13:37:33.922927000Z

2019-02-18 13:43:45 (17516): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.000169 main     Log opened 2019-02-18T13:37:33.922927000Z

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.007609 main     OS Product: Linux

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.007609 main     OS Product: Linux

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008620 main     OS Release: 4.1.19-boot2docker

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008667 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008707 main     Executable: /sbin/VBoxService

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008707 main     Process ID: 878

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008708 main     Package type: LINUX_64BITS_GENERIC

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008620 main     OS Release: 4.1.19-boot2docker

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008667 main     OS Version: #1 SMP Sun Apr 17 100:00:00.015441 main     5.0.16 r105871 started. Verbose level = 0

2019-02-18 13:43:45 (17516): Guest Log: 9:40:54 UTC 2016

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008707 main     Executable: /sbin/VBoxService

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008707 main     Process ID: 878

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.008708 main     Package type: LINUX_64BITS_GENERIC

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.015441 main     5.0.16 r105871 started. Verbose level = 0

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.027170 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-02-18 13:43:45 (17516): Guest Log: 00:00:00.027246 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-02-18 13:43:45 (17516): Guest Log: Mounting BOINC shared/...

2019-02-18 13:43:45 (17516): Guest Log: -------------------

2019-02-18 13:43:45 (17516): Guest Log: Mon Feb 18 18:37:35 UTC 2019

2019-02-18 13:43:45 (17516): Guest Log: 00:00:05.028705 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-02-18 13:43:45 (17516): Guest Log: Mon Feb 18 18:37:41 UTC 2019

2019-02-18 13:43:45 (17516): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-02-18 13:43:45 (17516): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-02-18 13:43:45 (17516): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-02-18 13:43:45 (17516): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 13:43:45 (17516): Guest Log:     inet6 ::1/128 scope host 

2019-02-18 13:43:45 (17516): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 13:43:45 (17516): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-02-18 13:43:45 (17516): Guest Log:     link/ether 56:d7:eb:65:ba:8b brd ff:ff:ff:ff:ff:ff

2019-02-18 13:43:45 (17516): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-02-18 13:43:45 (17516): Guest Log:     link/ether 08:00:27:7f:67:89 brd ff:ff:ff:ff:ff:ff

2019-02-18 13:43:45 (17516): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-02-18 13:43:45 (17516): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 13:43:45 (17516): Guest Log:     inet6 fe80::a00:27ff:fe7f:6789/64 scope link 

2019-02-18 13:43:45 (17516): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 13:43:45 (17516): Guest Log: -------------------

2019-02-18 13:43:45 (17516): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-02-18 13:43:45 (17516): Guest Log: Waiting for Docker daemon to start...

2019-02-18 13:43:45 (17516): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-02-18 13:43:45 (17516): Guest Log: Running boinc_app...

2019-02-18 13:43:45 (17516): Guest Log: Importing Docker image from BOINC...

2019-02-18 13:43:45 (17516): Guest Log: 00:00:10.030880 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-02-18 13:43:45 (17516): Guest Log: Prerun diagnostics...

2019-02-18 13:43:45 (17516): Guest Log: REPOSITORY              TAG                 IMAGE ID            CREATED             SIZE

2019-02-18 13:43:45 (17516): Guest Log: claughton/gromacs2018   latest              af5cb836fee4        9 months ago        465.8 MB

2019-02-18 13:43:45 (17516): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-02-18 13:43:45 (17516): Guest Log: 474.2M	/var/lib/docker

2019-02-18 13:43:45 (17516): Guest Log:               total        used        free      shared  buff/cache   available

2019-02-18 13:43:45 (17516): Guest Log: Mem:           2308          45        1587         638         675        1589

2019-02-18 13:43:45 (17516): Guest Log: Swap:           525           0         525

2019-02-18 13:43:45 (17516): Guest Log: Prerun commands...

2019-02-18 13:43:45 (17516): Guest Log: md_0_1.tpr

2019-02-18 13:43:45 (17516): Guest Log: Running... 

2019-02-18 13:43:45 (17516): Guest Log:                        :-) GROMACS - gmx mdrun, 2018 (-:

2019-02-18 13:43:45 (17516): Guest Log:                             GROMACS is written by:

2019-02-18 13:43:45 (17516): Guest Log:      Emile Apol      Rossen Apostolov  Herman J.C. Berendsen    Par Bjelkmar   

2019-02-18 13:43:45 (17516): Guest Log:  Aldert van Buuren   Rudi van Drunen     Anton Feenstra    Gerrit Groenhof  

2019-02-18 13:43:45 (17516): Guest Log:  Christoph Junghans   Anca Hamuraru    Vincent Hindriksen Dimitrios Karkoulis

2019-02-18 13:43:45 (17516): Guest Log:     Peter Kasson        Jiri Kraus      Carsten Kutzner      Per Larsson    

2019-02-18 13:43:45 (17516): Guest Log:   Justin A. Lemkul    Viveca Lindahl    Magnus Lundborg   Pieter Meulenhoff 

2019-02-18 13:43:45 (17516): Guest Log:    Erik Marklund      Teemu Murtola       Szilard Pall       Sander Pronk   

2019-02-18 13:43:45 (17516): Guest Log:    Roland Schulz     Alexey Shvetsov     Michael Shirts     Alfons Sijbers  

2019-02-18 13:43:45 (17516): Guest Log:    Peter Tieleman    Teemu Virolainen  Christian Wennberg    Maarten Wolf   

2019-02-18 13:43:45 (17516): Guest Log:                            and the project leaders:

2019-02-18 13:43:45 (17516): Guest Log:         Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel

2019-02-18 13:43:45 (17516): Guest Log: Copyright (c) 1991-2000, University of Groningen, The Netherlands.

2019-02-18 13:43:45 (17516): Guest Log: Copyright (c) 2001-2017, The GROMACS development team at

2019-02-18 13:43:45 (17516): Guest Log: Uppsala University, Stockholm University and

2019-02-18 13:43:45 (17516): Guest Log: the Royal Institute of Technology, Sweden.

2019-02-18 13:43:45 (17516): Guest Log: check out http://www.gromacs.org for more information.

2019-02-18 13:43:45 (17516): Guest Log: GROMACS is free software; you can redistribute it and/or modify it

2019-02-18 13:43:45 (17516): Guest Log: under the terms of the GNU Lesser General Public License

2019-02-18 13:43:45 (17516): Guest Log: as published by the Free Software Foundation; either version 2.1

2019-02-18 13:43:45 (17516): Guest Log: of the License, or (at your option) any later version.

2019-02-18 13:43:45 (17516): Guest Log: GROMACS:      gmx mdrun, version 2018

2019-02-18 13:43:45 (17516): Guest Log: Executable:   /opt/gromacs/sse2/bin/gmx

2019-02-18 13:43:45 (17516): Guest Log: Data prefix:  /opt/gromacs/sse2

2019-02-18 13:43:45 (17516): Guest Log: Working dir:  /

2019-02-18 13:43:45 (17516): Guest Log: Command line:

2019-02-18 13:43:45 (17516): Guest Log:   gmx mdrun -v -s /root/shared/md_0_1.tpr -g /root/shared/results/md_0_1.log -o /root/shared/results/md_0_1.trr -c /root/shared/results/md_0_1.gro -e /root/shared/results/md_0_1.edr -cpo /root/shared/results/md_0_1.cpt

2019-02-18 13:43:45 (17516): Guest Log: Back Off! I just backed up /root/shared/results/md_0_1.log to /root/shared/results/#md_0_1.log.1#

2019-02-18 13:43:45 (17516): Guest Log: Compiled SIMD: SSE2, but for this host/run AVX2_128 might be better (see log).

2019-02-18 13:43:45 (17516): Guest Log: The current CPU can measure timings more accurately than the code in

2019-02-18 13:43:45 (17516): Guest Log: gmx mdrun was configured to use. This might affect your simulation

2019-02-18 13:43:45 (17516): Guest Log: speed as accurate timings are needed for load-balancing.

2019-02-18 13:43:45 (17516): Guest Log: Please consider rebuilding gmx mdrun with the GMX_USE_RDTSCP=ON CMake option.

2019-02-18 13:43:45 (17516): Guest Log: Reading file /root/shared/md_0_1.tpr, VERSION 2018 (single precision)

2019-02-18 13:43:45 (17516): Guest Log: Changing nstlist from 10 to 50, rlist from 1 to 1.116

2019-02-18 13:43:45 (17516): Guest Log: No option -multi

2019-02-18 13:43:45 (17516): Guest Log: Using 1 MPI thread

2019-02-18 13:43:45 (17516): Guest Log: Using 1 OpenMP thread 

2019-02-18 13:43:45 (17516): Guest Log: Back Off! I just backed up /root/shared/results/md_0_1.edr to /root/shared/results/#md_0_1.edr.1#

2019-02-18 13:43:45 (17516): Guest Log: starting mdrun 'LYSOZYME in water'

2019-02-18 13:43:45 (17516): Guest Log: 500000 steps,   1000.0 ps.

2019-02-18 13:43:45 (17516): Starting VM. (boinc_2ff0941f406f5e0a, slot#12)
2019-02-18 13:43:54 (17516): Successfully started VM. (PID = '17856')
2019-02-18 13:43:54 (17516): Reporting VM Process ID to BOINC.
2019-02-18 13:43:59 (17516): VM state change detected. (old = 'poweroff', new = 'running')
2019-02-18 13:44:09 (17516): Preference change detected
2019-02-18 13:44:09 (17516): Setting CPU throttle for VM. (100%)
2019-02-18 13:44:09 (17516): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 600 seconds))
2019-02-18 13:45:24 (17516): Powering off VM.
2019-02-18 13:45:25 (17516): Successfully stopped VM.
2019-02-18 14:21:22 (14920): vboxwrapper (7.9.26200): starting
2019-02-18 14:21:22 (14920): Feature: Checkpoint interval offset (292 seconds)
2019-02-18 14:21:22 (14920): Detected: VirtualBox COM Interface (Version: 5.2.26)
2019-02-18 14:21:22 (14920): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-02-18 14:21:22 (14920): Guest Log: BIOS: VirtualBox 5.2.26

2019-02-18 14:21:22 (14920): Guest Log: CPUID EDX: 0x078bfbff

2019-02-18 14:21:22 (14920): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-02-18 14:21:22 (14920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-02-18 14:21:22 (14920): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-02-18 14:21:22 (14920): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-02-18 14:21:22 (14920): Guest Log: BIOS: Booting from CD-ROM...

2019-02-18 14:21:22 (14920): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-02-18 14:21:22 (14920): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-02-18 14:21:22 (14920): Guest Log: net.ipv4.ip_forward = 1

2019-02-18 14:21:22 (14920): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-02-18 14:21:22 (14920): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-02-18 14:21:22 (14920): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-02-18 14:21:22 (14920): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-02-18 14:21:22 (14920): Guest Log: Segmentation fault

2019-02-18 14:21:22 (14920): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-02-18 14:21:22 (14920): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-02-18 14:21:22 (14920): Guest Log: automount ...

2019-02-18 14:21:22 (14920): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-02-18 14:21:22 (14920): Guest Log: automount over.

2019-02-18 14:21:22 (14920): Guest Log: Setting hostname to boot2docker Done.

2019-02-18 14:21:22 (14920): Guest Log: Mon Feb 18 13:44:01 UTC 2019 dhcp -------------------------------

2019-02-18 14:21:22 (14920): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1084)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00 (1312)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1313)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1314)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1315)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1316)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1317)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1318)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1319)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1320)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1321)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1322)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1323)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1324)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1325)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1326)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1327)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1328)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1329)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1330)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1331)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1332)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1333)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1334)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1335)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00/power_supply/BAT0 (1336)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1337)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1338)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1339)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1340)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1341)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1342)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1343)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1344)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1345)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1346)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1347)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1348)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1349)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1350)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1351)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1352)

2019-02-18 14:21:22 (14920): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1353)

2019-02-18 14:21:22 (14920): Guest Log: Mon Feb 18 13:44:07 UTC 2019 dhcp -------------------------------

2019-02-18 14:21:22 (14920): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.000136 main     Log opened 2019-02-18T13:44:08.001048000Z

2019-02-18 14:21:22 (14920): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.000136 main     Log opened 2019-02-18T13:44:08.001048000Z

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.003301 main     OS Product: Linux

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.003301 main     OS Product: Linux

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004280 main     OS Release: 4.1.19-boot2docker

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004358 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004403 main     Executable: /sbin/VBoxService

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004404 main     Process ID: 837

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004405 main     Package type: LINUX_64BITS_GENERIC

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004280 main     OS Release: 4.1.19-boot2docker

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004358 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004403 main     Executable: /sbin/VBoxService

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004404 main     Process ID: 837

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.004405 main     Package type: LINUX_64BITS_GENERIC

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.011055 main     5.0.16 r105871 started. Verbose level = 0

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.014516 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.014614 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-02-18 14:21:22 (14920): Guest Log: 00:00:00.011055 main     5.0.16 r105871 started. Verbose level = 0

2019-02-18 14:21:22 (14920): Guest Log: Mounting BOINC shared/...

2019-02-18 14:21:22 (14920): Guest Log: -------------------

2019-02-18 14:21:22 (14920): Guest Log: Mon Feb 18 18:44:09 UTC 2019

2019-02-18 14:21:22 (14920): Guest Log: 00:00:05.015615 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-02-18 14:21:22 (14920): Guest Log: Mon Feb 18 18:44:15 UTC 2019

2019-02-18 14:21:22 (14920): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-02-18 14:21:22 (14920): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-02-18 14:21:22 (14920): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-02-18 14:21:22 (14920): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 14:21:22 (14920): Guest Log:     inet6 ::1/128 scope host 

2019-02-18 14:21:22 (14920): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 14:21:22 (14920): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-02-18 14:21:22 (14920): Guest Log:     link/ether 1a:0e:92:60:a6:f4 brd ff:ff:ff:ff:ff:ff

2019-02-18 14:21:22 (14920): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-02-18 14:21:22 (14920): Guest Log:     link/ether 08:00:27:7f:67:89 brd ff:ff:ff:ff:ff:ff

2019-02-18 14:21:22 (14920): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-02-18 14:21:22 (14920): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 14:21:22 (14920): Guest Log:     inet6 fe80::a00:27ff:fe7f:6789/64 scope link 

2019-02-18 14:21:22 (14920): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 14:21:22 (14920): Guest Log: -------------------

2019-02-18 14:21:22 (14920): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-02-18 14:21:22 (14920): Guest Log: Waiting for Docker daemon to start...

2019-02-18 14:21:22 (14920): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-02-18 14:21:22 (14920): Guest Log: Running boinc_app...

2019-02-18 14:21:22 (14920): Guest Log: Importing Docker image from BOINC...

2019-02-18 14:21:22 (14920): Guest Log: 00:00:10.016959 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-02-18 14:21:22 (14920): Guest Log: Prerun diagnostics...

2019-02-18 14:21:22 (14920): Guest Log: REPOSITORY              TAG                 IMAGE ID            CREATED             SIZE

2019-02-18 14:21:22 (14920): Guest Log: claughton/gromacs2018   latest              af5cb836fee4        9 months ago        465.8 MB

2019-02-18 14:21:22 (14920): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-02-18 14:21:22 (14920): Guest Log: 474.2M	/var/lib/docker

2019-02-18 14:21:22 (14920): Guest Log:               total        used        free      shared  buff/cache   available

2019-02-18 14:21:22 (14920): Guest Log: Mem:           2308          45        1587         638         675        1589

2019-02-18 14:21:22 (14920): Guest Log: Swap:           527           0         527

2019-02-18 14:21:22 (14920): Guest Log: Prerun commands...

2019-02-18 14:21:22 (14920): Guest Log: md_0_1.tpr

2019-02-18 14:21:22 (14920): Guest Log: Running... 

2019-02-18 14:21:22 (14920): Guest Log:                        :-) GROMACS - gmx mdrun, 2018 (-:

2019-02-18 14:21:22 (14920): Guest Log:                             GROMACS is written by:

2019-02-18 14:21:22 (14920): Guest Log:      Emile Apol      Rossen Apostolov  Herman J.C. Berendsen    Par Bjelkmar   

2019-02-18 14:21:22 (14920): Guest Log:  Aldert van Buuren   Rudi van Drunen     Anton Feenstra    Gerrit Groenhof  

2019-02-18 14:21:22 (14920): Guest Log:  Christoph Junghans   Anca Hamuraru    Vincent Hindriksen Dimitrios Karkoulis

2019-02-18 14:21:22 (14920): Guest Log:     Peter Kasson        Jiri Kraus      Carsten Kutzner      Per Larsson    

2019-02-18 14:21:22 (14920): Guest Log:   Justin A. Lemkul    Viveca Lindahl    Magnus Lundborg   Pieter Meulenhoff 

2019-02-18 14:21:22 (14920): Guest Log:    Erik Marklund      Teemu Murtola       Szilard Pall       Sander Pronk   

2019-02-18 14:21:22 (14920): Guest Log:    Roland Schulz     Alexey Shvetsov     Michael Shirts     Alfons Sijbers  

2019-02-18 14:21:22 (14920): Guest Log:    Peter Tieleman    Teemu Virolainen  Christian Wennberg    Maarten Wolf   

2019-02-18 14:21:22 (14920): Guest Log:                            and the project leaders:

2019-02-18 14:21:22 (14920): Guest Log:         Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel

2019-02-18 14:21:22 (14920): Guest Log: Copyright (c) 1991-2000, University of Groningen, The Netherlands.

2019-02-18 14:21:22 (14920): Guest Log: Copyright (c) 2001-2017, The GROMACS development team at

2019-02-18 14:21:22 (14920): Guest Log: Uppsala University, Stockholm University and

2019-02-18 14:21:22 (14920): Guest Log: the Royal Institute of Technology, Sweden.

2019-02-18 14:21:22 (14920): Guest Log: check out http://www.gromacs.org for more information.

2019-02-18 14:21:22 (14920): Guest Log: GROMACS is free software; you can redistribute it and/or modify it

2019-02-18 14:21:22 (14920): Guest Log: under the terms of the GNU Lesser General Public License

2019-02-18 14:21:22 (14920): Guest Log: as published by the Free Software Foundation; either version 2.1

2019-02-18 14:21:22 (14920): Guest Log: of the License, or (at your option) any later version.

2019-02-18 14:21:22 (14920): Guest Log: GROMACS:      gmx mdrun, version 2018

2019-02-18 14:21:22 (14920): Guest Log: Executable:   /opt/gromacs/sse2/bin/gmx

2019-02-18 14:21:22 (14920): Guest Log: Data prefix:  /opt/gromacs/sse2

2019-02-18 14:21:22 (14920): Guest Log: Working dir:  /

2019-02-18 14:21:22 (14920): Guest Log: Command line:

2019-02-18 14:21:22 (14920): Guest Log:   gmx mdrun -v -s /root/shared/md_0_1.tpr -g /root/shared/results/md_0_1.log -o /root/shared/results/md_0_1.trr -c /root/shared/results/md_0_1.gro -e /root/shared/results/md_0_1.edr -cpo /root/shared/results/md_0_1.cpt

2019-02-18 14:21:22 (14920): Guest Log: Back Off! I just backed up /root/shared/results/md_0_1.log to /root/shared/results/#md_0_1.log.2#

2019-02-18 14:21:22 (14920): Guest Log: Compiled SIMD: SSE2, but for this host/run AVX2_128 might be better (see log).

2019-02-18 14:21:22 (14920): Guest Log: The current CPU can measure timings more accurately than the code in

2019-02-18 14:21:22 (14920): Guest Log: gmx mdrun was configured to use. This might affect your simulation

2019-02-18 14:21:22 (14920): Guest Log: speed as accurate timings are needed for load-balancing.

2019-02-18 14:21:22 (14920): Guest Log: Please consider rebuilding gmx mdrun with the GMX_USE_RDTSCP=ON CMake option.

2019-02-18 14:21:22 (14920): Guest Log: Reading file /root/shared/md_0_1.tpr, VERSION 2018 (single precision)

2019-02-18 14:21:22 (14920): Guest Log: Changing nstlist from 10 to 50, rlist from 1 to 1.116

2019-02-18 14:21:22 (14920): Guest Log: No option -multi

2019-02-18 14:21:22 (14920): Guest Log: Using 1 MPI thread

2019-02-18 14:21:22 (14920): Guest Log: Using 1 OpenMP thread 

2019-02-18 14:21:22 (14920): Guest Log: Back Off! I just backed up /root/shared/results/md_0_1.edr to /root/shared/results/#md_0_1.edr.2#

2019-02-18 14:21:22 (14920): Guest Log: starting mdrun 'LYSOZYME in water'

2019-02-18 14:21:22 (14920): Guest Log: 500000 steps,   1000.0 ps.

2019-02-18 14:21:22 (14920): Starting VM. (boinc_2ff0941f406f5e0a, slot#12)
2019-02-18 14:21:30 (14920): Successfully started VM. (PID = '16344')
2019-02-18 14:21:30 (14920): Reporting VM Process ID to BOINC.
2019-02-18 14:21:35 (14920): VM state change detected. (old = 'poweroff', new = 'running')
2019-02-18 14:21:45 (14920): Preference change detected
2019-02-18 14:21:45 (14920): Setting CPU throttle for VM. (100%)
2019-02-18 14:21:45 (14920): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 600 seconds))
2019-02-18 14:22:41 (14920): Guest Log: Prerun diagnostics...

2019-02-18 14:22:41 (14920): Guest Log: REPOSITORY              TAG                 IMAGE ID            CREATED             SIZE

2019-02-18 14:22:41 (14920): Guest Log: claughton/gromacs2018   latest              af5cb836fee4        9 months ago        465.8 MB

2019-02-18 14:22:41 (14920): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-02-18 14:22:41 (14920): Guest Log: 474.2M	/var/lib/docker

2019-02-18 14:22:41 (14920): Guest Log:               total        used        free      shared  buff/cache   available

2019-02-18 14:22:41 (14920): Guest Log: Mem:           2308          46        1585         638         675        1588

2019-02-18 14:22:41 (14920): Guest Log: Swap:           525           0         525

2019-02-18 14:22:41 (14920): Guest Log: Prerun commands...

2019-02-18 14:22:41 (14920): Guest Log: md_0_1.tpr

2019-02-18 14:22:41 (14920): Guest Log: Running... 

2019-02-18 14:22:41 (14920): Guest Log:                        :-) GROMACS - gmx mdrun, 2018 (-:

2019-02-18 14:22:41 (14920): Guest Log:                             GROMACS is written by:

2019-02-18 14:22:41 (14920): Guest Log:      Emile Apol      Rossen Apostolov  Herman J.C. Berendsen    Par Bjelkmar   

2019-02-18 14:22:41 (14920): Guest Log:  Aldert van Buuren   Rudi van Drunen     Anton Feenstra    Gerrit Groenhof  

2019-02-18 14:22:41 (14920): Guest Log:  Christoph Junghans   Anca Hamuraru    Vincent Hindriksen Dimitrios Karkoulis

2019-02-18 14:22:41 (14920): Guest Log:     Peter Kasson        Jiri Kraus      Carsten Kutzner      Per Larsson    

2019-02-18 14:22:41 (14920): Guest Log:   Justin A. Lemkul    Viveca Lindahl    Magnus Lundborg   Pieter Meulenhoff 

2019-02-18 14:22:41 (14920): Guest Log:    Erik Marklund      Teemu Murtola       Szilard Pall       Sander Pronk   

2019-02-18 14:22:41 (14920): Guest Log:    Roland Schulz     Alexey Shvetsov     Michael Shirts     Alfons Sijbers  

2019-02-18 14:22:41 (14920): Guest Log:    Peter Tieleman    Teemu Virolainen  Christian Wennberg    Maarten Wolf   

2019-02-18 14:22:41 (14920): Guest Log:                            and the project leaders:

2019-02-18 14:22:41 (14920): Guest Log:         Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel

2019-02-18 14:22:41 (14920): Guest Log: Copyright (c) 1991-2000, University of Groningen, The Netherlands.

2019-02-18 14:22:41 (14920): Guest Log: Copyright (c) 2001-2017, The GROMACS development team at

2019-02-18 14:22:41 (14920): Guest Log: Uppsala University, Stockholm University and

2019-02-18 14:22:41 (14920): Guest Log: the Royal Institute of Technology, Sweden.

2019-02-18 14:22:41 (14920): Guest Log: check out http://www.gromacs.org for more information.

2019-02-18 14:22:41 (14920): Guest Log: GROMACS is free software; you can redistribute it and/or modify it

2019-02-18 14:22:41 (14920): Guest Log: under the terms of the GNU Lesser General Public License

2019-02-18 14:22:41 (14920): Guest Log: as published by the Free Software Foundation; either version 2.1

2019-02-18 14:22:41 (14920): Guest Log: of the License, or (at your option) any later version.

2019-02-18 14:22:41 (14920): Guest Log: GROMACS:      gmx mdrun, version 2018

2019-02-18 14:22:41 (14920): Guest Log: Executable:   /opt/gromacs/sse2/bin/gmx

2019-02-18 14:22:41 (14920): Guest Log: Data prefix:  /opt/gromacs/sse2

2019-02-18 14:22:41 (14920): Guest Log: Working dir:  /

2019-02-18 14:22:41 (14920): Guest Log: Command line:

2019-02-18 14:22:41 (14920): Guest Log:   gmx mdrun -v -s /root/shared/md_0_1.tpr -g /root/shared/results/md_0_1.log -o /root/shared/results/md_0_1.trr -c /root/shared/results/md_0_1.gro -e /root/shared/results/md_0_1.edr -cpo /root/shared/results/md_0_1.cpt

2019-02-18 14:22:41 (14920): Guest Log: Back Off! I just backed up /root/shared/results/md_0_1.log to /root/shared/results/#md_0_1.log.3#

2019-02-18 14:22:41 (14920): Guest Log: Compiled SIMD: SSE2, but for this host/run AVX2_128 might be better (see log).

2019-02-18 14:22:41 (14920): Guest Log: The current CPU can measure timings more accurately than the code in

2019-02-18 14:22:41 (14920): Guest Log: gmx mdrun was configured to use. This might affect your simulation

2019-02-18 14:22:41 (14920): Guest Log: speed as accurate timings are needed for load-balancing.

2019-02-18 14:22:41 (14920): Guest Log: Please consider rebuilding gmx mdrun with the GMX_USE_RDTSCP=ON CMake option.

2019-02-18 14:22:41 (14920): Guest Log: Reading file /root/shared/md_0_1.tpr, VERSION 2018 (single precision)

2019-02-18 14:22:41 (14920): Guest Log: Changing nstlist from 10 to 50, rlist from 1 to 1.116

2019-02-18 14:22:41 (14920): Guest Log: No option -multi

2019-02-18 14:22:41 (14920): Guest Log: Using 1 MPI thread

2019-02-18 14:22:41 (14920): Guest Log: Using 1 OpenMP thread 

2019-02-18 14:22:41 (14920): Guest Log: Back Off! I just backed up /root/shared/results/md_0_1.edr to /root/shared/results/#md_0_1.edr.3#

2019-02-18 14:22:41 (14920): Guest Log: starting mdrun 'LYSOZYME in water'

2019-02-18 14:22:41 (14920): Guest Log: 500000 steps,   1000.0 ps.

2019-02-18 14:23:51 (14920): Powering off VM.
2019-02-18 14:23:52 (14920): Successfully stopped VM.
2019-02-18 14:26:34 (12316): vboxwrapper (7.9.26200): starting
2019-02-18 14:26:34 (12316): Feature: Checkpoint interval offset (137 seconds)
2019-02-18 14:26:34 (12316): Detected: VirtualBox COM Interface (Version: 5.2.26)
2019-02-18 14:26:34 (12316): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-02-18 14:26:34 (12316): Guest Log: BIOS: VirtualBox 5.2.26

2019-02-18 14:26:34 (12316): Guest Log: CPUID EDX: 0x078bfbff

2019-02-18 14:26:34 (12316): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-02-18 14:26:34 (12316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2019-02-18 14:26:34 (12316): Guest Log: BIOS: Boot from Hard Disk 0 failed

2019-02-18 14:26:34 (12316): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2019-02-18 14:26:34 (12316): Guest Log: BIOS: Booting from CD-ROM...

2019-02-18 14:26:34 (12316): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-02-18 14:26:34 (12316): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-02-18 14:26:34 (12316): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-02-18 14:26:34 (12316): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-02-18 14:26:34 (12316): Guest Log: net.ipv4.ip_forward = 1

2019-02-18 14:26:34 (12316): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2019-02-18 14:26:34 (12316): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-02-18 14:26:34 (12316): Guest Log: sysctl: "cannot stat %s" is an unknown key

2019-02-18 14:26:34 (12316): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2019-02-18 14:26:34 (12316): Guest Log: Segmentation fault

2019-02-18 14:26:34 (12316): Guest Log: automount ...

2019-02-18 14:26:34 (12316): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2019-02-18 14:26:34 (12316): Guest Log: automount over.

2019-02-18 14:26:34 (12316): Guest Log: Setting hostname to boot2docker Done.

2019-02-18 14:26:34 (12316): Guest Log: Mon Feb 18 14:21:44 UTC 2019 dhcp -------------------------------

2019-02-18 14:26:34 (12316): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1084)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00 (1310)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1311)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1312)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1313)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1314)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1315)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1316)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1317)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1318)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1319)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1320)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1321)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1322)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1323)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1324)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1325)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1326)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1327)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1328)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1329)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1330)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1331)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1332)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1333)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00/power_supply/BAT0 (1334)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1335)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1336)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1337)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1338)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1339)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1340)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1341)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1342)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1343)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1344)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1345)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1346)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1347)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1348)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1349)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1350)

2019-02-18 14:26:34 (12316): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1351)

2019-02-18 14:26:34 (12316): Guest Log: Mon Feb 18 14:21:50 UTC 2019 dhcp -------------------------------

2019-02-18 14:26:34 (12316): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.000124 main     Log opened 2019-02-18T14:21:50.611919000Z

2019-02-18 14:26:34 (12316): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.000124 main     Log opened 2019-02-18T14:21:50.611919000Z

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.003170 main     OS Product: Linux

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.003170 main     OS Product: Linux

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004468 main     OS Release: 4.1.19-boot2docker

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004566 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004611 main     Executable: /sbin/VBoxService

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004612 main     Process ID: 912

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004613 main     Package type: LINUX_64BITS_GENERIC

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004468 main     OS Release: 4.1.19-boot2docker

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004566 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004611 main     Executable: /sbin/VBoxService

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004612 main     Process ID: 912

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.004613 main     Package type: LINUX_64BITS_GENERIC

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.010996 main     5.0.16 r105871 started. Verbose level = 0

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.014105 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.014185 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2019-02-18 14:26:34 (12316): Guest Log: 00:00:00.010996 main     5.0.16 r105871 started. Verbose level = 0

2019-02-18 14:26:34 (12316): Guest Log: Mounting BOINC shared/...

2019-02-18 14:26:34 (12316): Guest Log: -------------------

2019-02-18 14:26:34 (12316): Guest Log: Mon Feb 18 19:21:53 UTC 2019

2019-02-18 14:26:34 (12316): Guest Log: 00:00:05.014902 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2019-02-18 14:26:34 (12316): Guest Log: Mon Feb 18 19:22:00 UTC 2019

2019-02-18 14:26:34 (12316): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2019-02-18 14:26:34 (12316): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2019-02-18 14:26:34 (12316): Guest Log:     inet 127.0.0.1/8 scope host lo

2019-02-18 14:26:34 (12316): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 14:26:34 (12316): Guest Log:     inet6 ::1/128 scope host 

2019-02-18 14:26:34 (12316): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 14:26:34 (12316): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2019-02-18 14:26:34 (12316): Guest Log:     link/ether ee:02:77:7b:61:bd brd ff:ff:ff:ff:ff:ff

2019-02-18 14:26:34 (12316): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2019-02-18 14:26:34 (12316): Guest Log:     link/ether 08:00:27:7f:67:89 brd ff:ff:ff:ff:ff:ff

2019-02-18 14:26:34 (12316): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2019-02-18 14:26:34 (12316): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 14:26:34 (12316): Guest Log:     inet6 fe80::a00:27ff:fe7f:6789/64 scope link 

2019-02-18 14:26:34 (12316): Guest Log:        valid_lft forever preferred_lft forever

2019-02-18 14:26:34 (12316): Guest Log: -------------------

2019-02-18 14:26:34 (12316): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2019-02-18 14:26:34 (12316): Guest Log: Waiting for Docker daemon to start...

2019-02-18 14:26:34 (12316): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2019-02-18 14:26:34 (12316): Guest Log: Running boinc_app...

2019-02-18 14:26:34 (12316): Guest Log: Importing Docker image from BOINC...

2019-02-18 14:26:34 (12316): Guest Log: 00:00:10.016191 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2019-02-18 14:26:34 (12316): Guest Log: Prerun diagnostics...

2019-02-18 14:26:34 (12316): Guest Log: REPOSITORY              TAG                 IMAGE ID            CREATED             SIZE

2019-02-18 14:26:34 (12316): Guest Log: claughton/gromacs2018   latest              af5cb836fee4        9 months ago        465.8 MB

2019-02-18 14:26:34 (12316): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2019-02-18 14:26:34 (12316): Guest Log: 474.2M	/var/lib/docker

2019-02-18 14:26:34 (12316): Guest Log:               total        used        free      shared  buff/cache   available

2019-02-18 14:26:34 (12316): Guest Log: Mem:           2308          46        1585         638         675        1588

2019-02-18 14:26:34 (12316): Guest Log: Swap:           525           0         525

2019-02-18 14:26:34 (12316): Guest Log: Prerun commands...

2019-02-18 14:26:34 (12316): Guest Log: md_0_1.tpr

2019-02-18 14:26:34 (12316): Guest Log: Running... 

2019-02-18 14:26:34 (12316): Guest Log:                        :-) GROMACS - gmx mdrun, 2018 (-:

2019-02-18 14:26:34 (12316): Guest Log:                             GROMACS is written by:

2019-02-18 14:26:34 (12316): Guest Log:      Emile Apol      Rossen Apostolov  Herman J.C. Berendsen    Par Bjelkmar   

2019-02-18 14:26:34 (12316): Guest Log:  Aldert van Buuren   Rudi van Drunen     Anton Feenstra    Gerrit Groenhof  

2019-02-18 14:26:34 (12316): Guest Log:  Christoph Junghans   Anca Hamuraru    Vincent Hindriksen Dimitrios Karkoulis

2019-02-18 14:26:34 (12316): Guest Log:     Peter Kasson        Jiri Kraus      Carsten Kutzner      Per Larsson    

2019-02-18 14:26:34 (12316): Guest Log:   Justin A. Lemkul    Viveca Lindahl    Magnus Lundborg   Pieter Meulenhoff 

2019-02-18 14:26:34 (12316): Guest Log:    Erik Marklund      Teemu Murtola       Szilard Pall       Sander Pronk   

2019-02-18 14:26:34 (12316): Guest Log:    Roland Schulz     Alexey Shvetsov     Michael Shirts     Alfons Sijbers  

2019-02-18 14:26:34 (12316): Guest Log:    Peter Tieleman    Teemu Virolainen  Christian Wennberg    Maarten Wolf   

2019-02-18 14:26:34 (12316): Guest Log:                            and the project leaders:

2019-02-18 14:26:34 (12316): Guest Log:         Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel

2019-02-18 14:26:34 (12316): Guest Log: Copyright (c) 1991-2000, University of Groningen, The Netherlands.

2019-02-18 14:26:34 (12316): Guest Log: Copyright (c) 2001-2017, The GROMACS development team at

2019-02-18 14:26:34 (12316): Guest Log: Uppsala University, Stockholm University and

2019-02-18 14:26:34 (12316): Guest Log: the Royal Institute of Technology, Sweden.

2019-02-18 14:26:34 (12316): Guest Log: check out http://www.gromacs.org for more information.

2019-02-18 14:26:34 (12316): Guest Log: GROMACS is free software; you can redistribute it and/or modify it

2019-02-18 14:26:34 (12316): Guest Log: under the terms of the GNU Lesser General Public License

2019-02-18 14:26:34 (12316): Guest Log: as published by the Free Software Foundation; either version 2.1

2019-02-18 14:26:34 (12316): Guest Log: of the License, or (at your option) any later version.

2019-02-18 14:26:34 (12316): Guest Log: GROMACS:      gmx mdrun, version 2018

2019-02-18 14:26:34 (12316): Guest Log: Executable:   /opt/gromacs/sse2/bin/gmx

2019-02-18 14:26:34 (12316): Guest Log: Data prefix:  /opt/gromacs/sse2

2019-02-18 14:26:34 (12316): Guest Log: Working dir:  /

2019-02-18 14:26:34 (12316): Guest Log: Command line:

2019-02-18 14:26:34 (12316): Guest Log:   gmx mdrun -v -s /root/shared/md_0_1.tpr -g /root/shared/results/md_0_1.log -o /root/shared/results/md_0_1.trr -c /root/shared/results/md_0_1.gro -e /root/shared/results/md_0_1.edr -cpo /root/shared/results/md_0_1.cpt

2019-02-18 14:26:34 (12316): Guest Log: Back Off! I just backed up /root/shared/results/md_0_1.log to /root/shared/results/#md_0_1.log.3#

2019-02-18 14:26:34 (12316): Guest Log: Compiled SIMD: SSE2, but for this host/run AVX2_128 might be better (see log).

2019-02-18 14:26:34 (12316): Guest Log: The current CPU can measure timings more accurately than the code in

2019-02-18 14:26:34 (12316): Guest Log: gmx mdrun was configured to use. This might affect your simulation

2019-02-18 14:26:34 (12316): Guest Log: speed as accurate timings are needed for load-balancing.

2019-02-18 14:26:34 (12316): Guest Log: Please consider rebuilding gmx mdrun with the GMX_USE_RDTSCP=ON CMake option.

2019-02-18 14:26:34 (12316): Guest Log: Reading file /root/shared/md_0_1.tpr, VERSION 2018 (single precision)

2019-02-18 14:26:34 (12316): Guest Log: Changing nstlist from 10 to 50, rlist from 1 to 1.116

2019-02-18 14:26:34 (12316): Guest Log: No option -multi

2019-02-18 14:26:34 (12316): Guest Log: Using 1 MPI thread

2019-02-18 14:26:34 (12316): Guest Log: Using 1 OpenMP thread 

2019-02-18 14:26:34 (12316): Guest Log: Back Off! I just backed up /root/shared/results/md_0_1.edr to /root/shared/results/#md_0_1.edr.3#

2019-02-18 14:26:34 (12316): Guest Log: starting mdrun 'LYSOZYME in water'

2019-02-18 14:26:34 (12316): Guest Log: 500000 steps,   1000.0 ps.

2019-02-18 14:26:34 (12316): Starting VM. (boinc_2ff0941f406f5e0a, slot#12)
2019-02-18 14:26:43 (12316): Successfully started VM. (PID = '11892')
2019-02-18 14:26:43 (12316): Reporting VM Process ID to BOINC.
2019-02-18 14:26:48 (12316): VM state change detected. (old = 'poweroff', new = 'running')
2019-02-18 14:26:58 (12316): Preference change detected
2019-02-18 14:26:58 (12316): Setting CPU throttle for VM. (100%)
2019-02-18 14:26:58 (12316): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 600 seconds))
2019-02-18 14:27:38 (12316): Powering off VM.
2019-02-18 14:27:39 (12316): Successfully stopped VM.
2019-02-18 14:27:44 (12316): Deregistering VM. (boinc_2ff0941f406f5e0a, slot#12)
2019-02-18 14:27:44 (12316): Removing virtual disk drive(s) from VM.
2019-02-18 14:27:44 (12316): Removing network bandwidth throttle group from VM.
2019-02-18 14:27:44 (12316): Removing storage controller(s) from VM.
2019-02-18 14:27:44 (12316): Removing VM from VirtualBox.

    Hypervisor System Log:

00:06:24.526129          Saving settings file "C:\ProgramData\BOINC\slots\1\boinc_a3481e2e80cbdf6d\boinc_a3481e2e80cbdf6d.vbox" with version "1.16-windows"
00:06:24.541754          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 5 virtual machines}, preserve=false aResultDetail=0
00:06:24.541754          Saving settings file "C:\Users\Glenn\.VirtualBox\VirtualBox.xml" with version "1.12-windows"
00:06:24.557380          ERROR [COM]: aRC=E_ACCESSDENIED (0x80070005) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={The object is not ready}, preserve=false aResultDetail=0
00:06:24.557380          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 5 virtual machines}, preserve=false aResultDetail=0
00:06:24.588633          ERROR [COM]: aRC=E_FAIL (0x80004005) aIID={85cd948e-a71f-4289-281e-0ca7ad48cd89} aComponent={SessionMachine} aText={This machine does not have any snapshots}, preserve=false aResultDetail=0
00:06:24.588633          Saving settings file "C:\ProgramData\BOINC\slots\21\boinc_7183ab0ec2985d97\boinc_7183ab0ec2985d97.vbox" with version "1.16-windows"
00:06:24.604259          Saving settings file "C:\ProgramData\BOINC\slots\21\boinc_7183ab0ec2985d97\boinc_7183ab0ec2985d97.vbox" with version "1.16-windows"
00:06:24.604259          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 4 virtual machines}, preserve=false aResultDetail=0
00:06:24.604259          Saving settings file "C:\Users\Glenn\.VirtualBox\VirtualBox.xml" with version "1.12-windows"
00:06:24.619885          ERROR [COM]: aRC=E_ACCESSDENIED (0x80070005) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={The object is not ready}, preserve=false aResultDetail=0
00:06:24.619885          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 4 virtual machines}, preserve=false aResultDetail=0
00:06:24.666763          ERROR [COM]: aRC=E_FAIL (0x80004005) aIID={85cd948e-a71f-4289-281e-0ca7ad48cd89} aComponent={SessionMachine} aText={This machine does not have any snapshots}, preserve=false aResultDetail=0
00:06:24.666763          Saving settings file "C:\ProgramData\BOINC\slots\5\boinc_faad1db6f13d9d96\boinc_faad1db6f13d9d96.vbox" with version "1.16-windows"
00:06:24.682391          Saving settings file "C:\ProgramData\BOINC\slots\5\boinc_faad1db6f13d9d96\boinc_faad1db6f13d9d96.vbox" with version "1.16-windows"
00:06:24.682391          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 3 virtual machines}, preserve=false aResultDetail=0
00:06:24.682391          Saving settings file "C:\Users\Glenn\.VirtualBox\VirtualBox.xml" with version "1.12-windows"
00:06:24.698017          ERROR [COM]: aRC=E_ACCESSDENIED (0x80070005) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={The object is not ready}, preserve=false aResultDetail=0
00:06:24.698017          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 3 virtual machines}, preserve=false aResultDetail=0
00:06:24.729268          ERROR [COM]: aRC=E_FAIL (0x80004005) aIID={85cd948e-a71f-4289-281e-0ca7ad48cd89} aComponent={SessionMachine} aText={This machine does not have any snapshots}, preserve=false aResultDetail=0
00:06:24.729268          Saving settings file "C:\ProgramData\BOINC\slots\0\boinc_14584f01a570027a\boinc_14584f01a570027a.vbox" with version "1.16-windows"
00:06:24.744896          Saving settings file "C:\ProgramData\BOINC\slots\0\boinc_14584f01a570027a\boinc_14584f01a570027a.vbox" with version "1.16-windows"
00:06:24.744896          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 2 virtual machines}, preserve=false aResultDetail=0
00:06:24.744896          Saving settings file "C:\Users\Glenn\.VirtualBox\VirtualBox.xml" with version "1.12-windows"
00:06:24.760521          ERROR [COM]: aRC=E_ACCESSDENIED (0x80070005) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={The object is not ready}, preserve=false aResultDetail=0
00:06:24.760521          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 2 virtual machines}, preserve=false aResultDetail=0
00:06:24.791774          ERROR [COM]: aRC=E_FAIL (0x80004005) aIID={85cd948e-a71f-4289-281e-0ca7ad48cd89} aComponent={SessionMachine} aText={This machine does not have any snapshots}, preserve=false aResultDetail=0
00:06:24.791774          Saving settings file "C:\ProgramData\BOINC\slots\12\boinc_2ff0941f406f5e0a\boinc_2ff0941f406f5e0a.vbox" with version "1.16-windows"
00:06:24.807401          Saving settings file "C:\ProgramData\BOINC\slots\12\boinc_2ff0941f406f5e0a\boinc_2ff0941f406f5e0a.vbox" with version "1.16-windows"
00:06:24.807401          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 1 virtual machines}, preserve=false aResultDetail=0
00:06:24.807401          Saving settings file "C:\Users\Glenn\.VirtualBox\VirtualBox.xml" with version "1.12-windows"
00:06:24.823025          ERROR [COM]: aRC=E_ACCESSDENIED (0x80070005) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={The object is not ready}, preserve=false aResultDetail=0
00:06:24.823025          ERROR [COM]: aRC=VBOX_E_OBJECT_IN_USE (0x80bb000c) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={Medium 'C:\Program Files\Oracle\VirtualBox\VBoxGuestAdditions.iso' cannot be closed because it is still attached to 1 virtual machines}, preserve=false aResultDetail=0
00:06:24.869906          ERROR [COM]: aRC=E_FAIL (0x80004005) aIID={85cd948e-a71f-4289-281e-0ca7ad48cd89} aComponent={SessionMachine} aText={This machine does not have any snapshots}, preserve=false aResultDetail=0
00:06:24.869906          Saving settings file "C:\ProgramData\BOINC\slots\11\boinc_583a67169238c2fd\boinc_583a67169238c2fd.vbox" with version "1.16-windows"
00:06:24.869906          Saving settings file "C:\ProgramData\BOINC\slots\11\boinc_583a67169238c2fd\boinc_583a67169238c2fd.vbox" with version "1.16-windows"
00:06:24.885532          Saving settings file "C:\Users\Glenn\.VirtualBox\VirtualBox.xml" with version "1.12-windows"
00:06:24.901158          ERROR [COM]: aRC=E_ACCESSDENIED (0x80070005) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={The object is not ready}, preserve=false aResultDetail=0
00:06:24.901158          ERROR [COM]: aRC=E_ACCESSDENIED (0x80070005) aIID={4afe423b-43e0-e9d0-82e8-ceb307940dda} aComponent={MediumWrap} aText={The object is not ready}, preserve=false aResultDetail=0

    VM Execution Log:


    VM Startup Log:


    VM Trace Log:

14:27:54 (12316): called boinc_finish(194)

</stderr_txt>
]]>


©2019 GPCR Drug Discovery group at the Pompeu Fabra University